vector<Calculator*> sumCalculators;
InputData* input;
ValidCalculators* validCalculator;
- SharedListVector* SharedList;
- OptionParser* parser;
- map<string, string> parameters;
- map<string, string>::iterator it;
- bool abort, allLines, mult;
+
+ bool abort, allLines, mult, all;
set<string> labels; //holds labels to be used
string label, calc, groups;
- vector<string> Estimators, Groups;
+ vector<string> Estimators, Groups, outputNames;
vector<SharedRAbundVector*> lookup;
- string outputFileName, format, outAllFileName;
+ string outputFileName, format, outAllFileName, outputDir;
ofstream outputFileHandle, outAll;
- void process(vector<SharedRAbundVector*>);
+ int process(vector<SharedRAbundVector*>);
};