// ***************************************************************************
// bamtools_utilities.h (c) 2010 Derek Barnett, Erik Garrison
// Marth Lab, Department of Biology, Boston College
-// All rights reserved.
// ---------------------------------------------------------------------------
-// Last modified: 26 January 2011
+// Last modified: 7 October 2011
// ---------------------------------------------------------------------------
// Provides general utilities used by BamTools sub-tools.
// ***************************************************************************
#include <api/BamAux.h>
#include <utils/utils_global.h>
-#include <cassert>
-#include <stdexcept>
#include <string>
+#include <vector>
-#define BAMTOOLS_ASSERT_UNREACHABLE assert( false )
-#define BAMTOOLS_ASSERT_MESSAGE( condition, message ) if (!( condition )) throw std::runtime_error( message );
+#define BAMTOOLS_ASSERT_UNREACHABLE BT_ASSERT_UNREACHABLE
+#define BAMTOOLS_ASSERT_MESSAGE( condition, message ) BT_ASSERT_X( condition, message )
namespace BamTools {
class UTILS_EXPORT Utilities {
public:
+ // returns true if 'source' contains 'pattern' or 'c'
+ static bool Contains(const std::string& source, const std::string& pattern);
+ static bool Contains(const std::string& source, const char c);
+
+ // returns true if 'source' ends with 'pattern' or 'c'
+ static bool EndsWith(const std::string& source, const std::string& pattern);
+ static bool EndsWith(const std::string& source, const char c);
+
// check if a file exists
static bool FileExists(const std::string& fname);
// sequence utilities
static void Reverse(std::string& sequence);
static void ReverseComplement(std::string& sequence);
+
+ // split string on delimiter character (or string of allowed delimiters)
+ static std::vector<std::string> Split(const std::string& source, const char delim);
+ static std::vector<std::string> Split(const std::string& source, const std::string& delims);
+
+ // returns true if 'source' starts with 'pattern' or 'c'
+ static bool StartsWith(const std::string& source, const std::string& pattern);
+ static bool StartsWith(const std::string &source, const char c);
};
} // namespace BamTools