// ***************************************************************************
// bamtools_resolve.cpp (c) 2011
// Marth Lab, Department of Biology, Boston College
-// All rights reserved.
// ---------------------------------------------------------------------------
-// Last modified: 6 July 2011
+// Last modified: 12 October 2011
// ---------------------------------------------------------------------------
// Resolves paired-end reads (marking the IsProperPair flag as needed).
// ***************************************************************************
SamReadGroupConstIterator rgIter = header.ReadGroups.ConstBegin();
SamReadGroupConstIterator rgEnd = header.ReadGroups.ConstEnd();
for ( ; rgIter != rgEnd; ++rgIter ) {
- const SamReadGroup& rg = (*rgIter);
+ const SamReadGroup& rg = rgIter->second;
m_readGroups.insert( make_pair<string, ReadGroupResolver>(rg.ID, ReadGroupResolver()) );
}
}