// Marth Lab, Department of Biology, Boston College
// All rights reserved.
// ---------------------------------------------------------------------------
-// Last modified: 7 July 2010
+// Last modified: 2 September 2010
// ---------------------------------------------------------------------------
// Creates a BAM index (".bai") file for the provided BAM file.
// ***************************************************************************
// set up options
OptionGroup* IO_Opts = Options::CreateOptionGroup("Input & Output");
Options::AddValueOption("-in", "BAM filename", "the input BAM file", "", m_settings->HasInputBamFilename, m_settings->InputBamFilename, IO_Opts, Options::StandardIn());
- Options::AddOption("-bti", "use (non-standard) BamTools indexing scheme", m_settings->IsUsingBamtoolsIndex, IO_Opts);
+ Options::AddOption("-bti", "create (non-standard) BamTools index file", m_settings->IsUsingBamtoolsIndex, IO_Opts);
}
IndexTool::~IndexTool(void) {