// bamtools_filter.cpp (c) 2010 Derek Barnett, Erik Garrison
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
-// Last modified: 7 April 2011
+// Last modified: 14 October 2011
// ---------------------------------------------------------------------------
// Filters BAM file(s) according to some user-specified criteria
// ***************************************************************************
if ( !inFile ) {
cerr << "bamtools filter ERROR: could not open script: "
<< m_settings->ScriptFilename << " for reading" << endl;
- return false;
+ return string();
}
// read in entire script contents
// read next block of data
if ( fgets(buffer, 1024, inFile) == 0 ) {
cerr << "bamtools filter ERROR: could not read script contents" << endl;
- return false;
+ return string();
}
docStream << buffer;
fclose(inFile);
// import buffer contents to document, return
- string document = docStream.str();
- return document;
+ return docStream.str();
}
void FilterTool::FilterToolPrivate::InitProperties(void) {