prefer bamtools index in BamMultiReader

[bamtools.git] / src / toolkit / bamtools_convert.cpp

diff --git a/src/toolkit/bamtools_convert.cpp b/src/toolkit/bamtools_convert.cpp
index 1c5ba4884ac73412f9e45a38575d9fba6de4dc88..edfc83c6761823430531bc672b355ab1a28e2a71 100644 (file)
--- a/src/toolkit/bamtools_convert.cpp
+++ b/src/toolkit/bamtools_convert.cpp
@@ -186,7 +186,7 @@ bool ConvertTool::ConvertToolPrivate::Run(void) {
     
     // open input files
     BamMultiReader reader;
-    reader.Open(m_settings->InputFiles, false);
+    reader.Open(m_settings->InputFiles);
     m_references = reader.GetReferenceData();
 
     // set region if specified