Documentation update

[bamtools.git] / src / toolkit / bamtools.cpp

diff --git a/src/toolkit/bamtools.cpp b/src/toolkit/bamtools.cpp
index f75b93d3e3096a65c814907f56f86d524970fbc5..20b8cf13f4db72d84bb700ccb360e3b83f993d58 100644 (file)
--- a/src/toolkit/bamtools.cpp
+++ b/src/toolkit/bamtools.cpp
@@ -77,16 +77,16 @@ int Help(int argc, char* argv[]) {
     cerr << "usage: bamtools [--help] COMMAND [ARGS]" << endl;
     cerr << endl;
     cerr << "Available bamtools commands:" << endl;
-    cerr << "\tconvert   Converts between BAM and a number of other formats" << endl;
-    cerr << "\tcount     Prints number of alignments in BAM file" << endl;
-    cerr << "\tcoverage  Prints coverage statistics from the input BAM file" << endl;
-    cerr << "\tfilter    Filters BAM file(s) by user-specified criteria" << endl;
-    cerr << "\theader    Prints BAM header information" << endl;
-    cerr << "\tindex     Generates index for BAM file" << endl;
-    cerr << "\tmerge     Merge multiple BAM files into single file" << endl;
-    cerr << "\trandom    Grab a random subset of alignments" << endl;
-    cerr << "\tsort      Sorts the BAM file according to some criteria" << endl;
-    cerr << "\tstats     Prints general alignment statistics" << endl;
+    cerr << "\tconvert         Converts between BAM and a number of other formats" << endl;
+    cerr << "\tcount           Prints number of alignments in BAM file(s)" << endl;
+    cerr << "\tcoverage        Prints coverage statistics from the input BAM file" << endl;    
+    cerr << "\tfilter          Filters BAM file(s) by user-specified criteria" << endl;
+    cerr << "\theader          Prints BAM header information" << endl;
+    cerr << "\tindex           Generates index for BAM file" << endl;
+    cerr << "\tmerge           Merge multiple BAM files into single file" << endl;
+    cerr << "\trandom          Select random alignments from existing BAM file(s)" << endl;
+    cerr << "\tsort            Sorts the BAM file according to some criteria" << endl;
+    cerr << "\tstats           Prints some basic statistics from input BAM file(s)" << endl;
     cerr << endl;
     cerr << "See 'bamtools help COMMAND' for more information on a specific command." << endl;
     cerr << endl;