--- /dev/null
+# ==========================
+# BamTools CMakeLists.txt
+# (c) 2010 Derek Barnett
+#
+# src/toolkit
+# ==========================
+
+# set include path
+include_directories ( ${BamTools_SOURCE_DIR}/src/api
+ ${BamTools_SOURCE_DIR}/src/utils
+ ${BamTools_SOURCE_DIR}/src/third_party
+ )
+
+# compile main bamtools application
+add_executable ( bamtools
+ bamtools_convert.cpp
+ bamtools_count.cpp
+ bamtools_coverage.cpp
+ bamtools_filter.cpp
+ bamtools_header.cpp
+ bamtools_index.cpp
+ bamtools_merge.cpp
+ bamtools_random.cpp
+ bamtools_sort.cpp
+ bamtools_split.cpp
+ bamtools_stats.cpp
+ bamtools.cpp
+ )
+
+# set BamTools application properties
+set_target_properties( BamTools PROPERTIES
+ VERSION 0.9.0
+ )
+# make version info available in application
+configure_file(bamtools_version.h.in ${BamTools_SOURCE_DIR}/src/toolkit/bamtools_version.h)
+
+# define libraries to link
+target_link_libraries ( bamtools BamTools BamTools-utils jsoncpp )
+