Reorganized test suite source tree

[bamtools.git] / src / test / api / BamIndex / BamIndexFactoryTest.h

diff --git a/src/test/api/BamIndex/BamIndexFactoryTest.h b/src/test/api/BamIndex/BamIndexFactoryTest.h
deleted file mode 100644 (file)
index f6755df..0000000
--- a/src/test/api/BamIndex/BamIndexFactoryTest.h
+++ /dev/null
@@ -1,89 +0,0 @@
-#ifndef BAMINDEX_FACTORYTEST_H
-#define BAMINDEX_FACTORYTEST_H
-
-#include "api/BamIndex.h"
-#include "api/internal/index/BamIndexFactory_p.h"
-#include "api/internal/index/BamStandardIndex_p.h"
-#include "api/internal/index/BamToolsIndex_p.h"
-
-#include <gtest/gtest.h>
-#include <iostream>
-#include <string>
-
-TEST(BamIndex_FactoryTest, CreateIndexFilename) {
-
-    const std::string bamFilename      = "dummy.bam";
-    const std::string baiIndexFilename = BamTools::Internal::BamIndexFactory::CreateIndexFilename(bamFilename, BamTools::BamIndex::STANDARD);
-    const std::string btiIndexFilename = BamTools::Internal::BamIndexFactory::CreateIndexFilename(bamFilename, BamTools::BamIndex::BAMTOOLS);
-
-    EXPECT_EQ("dummy.bam.bai", baiIndexFilename);
-    EXPECT_EQ("dummy.bam.bti", btiIndexFilename);
-}
-
-TEST(BamIndex_FactoryTest, FileExtension) {
-
-    const std::string bamFilename      = "dummy.bam";
-    const std::string baiIndexFilename = "dummy.bam.bai";
-    const std::string btiIndexFilename = "path/to/dummy.bam.bti";
-
-    const std::string bamExtension = BamTools::Internal::BamIndexFactory::FileExtension(bamFilename);
-    const std::string baiExtension = BamTools::Internal::BamIndexFactory::FileExtension(baiIndexFilename);
-    const std::string btiExtension = BamTools::Internal::BamIndexFactory::FileExtension(btiIndexFilename);
-
-    EXPECT_EQ(".bam", bamExtension);
-    EXPECT_EQ(".bai", baiExtension);
-    EXPECT_EQ(".bti", btiExtension);
-
-    // TODO: try some invalid values, just to make sure this is robust/safe enough
-}
-
-TEST(BamIndex_FactoryTest, CreateIndexFromFilename) {
-
-    const std::string baiIndexFilename = "../data/ex1.bam.bai";
-    const std::string btiIndexFilename = "../data/ex1.bam.bti";
-
-    BamTools::BamIndex* bai = BamTools::Internal::BamIndexFactory::CreateIndexFromFilename(baiIndexFilename, 0);
-    BamTools::BamIndex* bti = BamTools::Internal::BamIndexFactory::CreateIndexFromFilename(btiIndexFilename, 0);
-
-    ASSERT_TRUE(bai != NULL);
-    ASSERT_TRUE(bti != NULL);
-
-    EXPECT_EQ(BamTools::BamIndex::STANDARD, bai->Type());
-    EXPECT_EQ(BamTools::BamIndex::BAMTOOLS, bti->Type());
-
-    delete bai;
-    delete bti;
-
-    std::cerr << "TestMessage 4" << std::endl;
-}
-
-TEST(BamIndex_FactoryTest, CreateIndexOfType) {
-
-    BamTools::BamIndex* bai = BamTools::Internal::BamIndexFactory::CreateIndexOfType(BamTools::BamIndex::STANDARD, 0);
-    BamTools::BamIndex* bti = BamTools::Internal::BamIndexFactory::CreateIndexOfType(BamTools::BamIndex::BAMTOOLS, 0);
-
-    EXPECT_EQ(BamTools::BamIndex::STANDARD, bai->Type());
-    EXPECT_EQ(BamTools::BamIndex::BAMTOOLS, bti->Type());
-
-    delete bai;
-    delete bti;
-}
-
-TEST(BamIndex_FactoryTest, FindIndexFilename) {
-
-    // Both BAI & BTI are available
-    const std::string bamFilename = "../data/ex1.bam";
-    const std::string baiIndexFilename = BamTools::Internal::BamIndexFactory::FindIndexFilename(bamFilename, BamTools::BamIndex::STANDARD);
-    const std::string btiIndexFilename = BamTools::Internal::BamIndexFactory::FindIndexFilename(bamFilename, BamTools::BamIndex::BAMTOOLS);
-    EXPECT_EQ("../data/ex1.bam.bai", baiIndexFilename);
-    EXPECT_EQ("../data/ex1.bam.bti", btiIndexFilename);
-
-    // No BTI index available, both requests should fall back to BAI
-    const std::string bamFilename2 = "../data/BCM.ceph.chr20.bam";
-    const std::string baiIndexFilename2 = BamTools::Internal::BamIndexFactory::FindIndexFilename(bamFilename2, BamTools::BamIndex::STANDARD);
-    const std::string btiIndexFilename2 = BamTools::Internal::BamIndexFactory::FindIndexFilename(bamFilename2, BamTools::BamIndex::BAMTOOLS);
-    EXPECT_EQ("../data/BCM.ceph.chr20.bam.bai", baiIndexFilename2);
-    EXPECT_EQ("../data/BCM.ceph.chr20.bam.bai", btiIndexFilename2);
-}
-
-#endif // BAMINDEX_FACTORYTEST_H