+++ /dev/null
-// ***************************************************************************
-// SamFormatParser.h (c) 2010 Derek Barnett
-// Marth Lab, Department of Biology, Boston College
-// ---------------------------------------------------------------------------
-// Last modified: 23 December 2010 (DB)
-// ---------------------------------------------------------------------------
-// Provides functionality for parsing SAM header text into SamHeader object
-// ***************************************************************************
-
-#ifndef SAM_FORMAT_PARSER_H
-#define SAM_FORMAT_PARSER_H
-
-// -------------
-// W A R N I N G
-// -------------
-//
-// This file is not part of the BamTools API. It exists purely as an
-// implementation detail. This header file may change from version to version
-// without notice, or even be removed.
-//
-// We mean it.
-
-#include <string>
-#include <vector>
-
-namespace BamTools {
-
-class SamHeader;
-
-namespace Internal {
-
-class SamFormatParser {
-
- // ctor & dtor
- public:
- SamFormatParser(BamTools::SamHeader& header);
- ~SamFormatParser(void);
-
- // parse text & populate header data
- public:
- void Parse(const std::string& headerText);
-
- // internal methods
- private:
- void ParseSamLine(const std::string& line);
- void ParseHDLine(const std::string& line);
- void ParseSQLine(const std::string& line);
- void ParseRGLine(const std::string& line);
- void ParsePGLine(const std::string& line);
- void ParseCOLine(const std::string& line);
- const std::vector<std::string> Split(const std::string& line, const char delim);
-
- // data members
- private:
- SamHeader& m_header;
-};
-
-} // namespace Internal
-} // namespace BamTools
-
-#endif // SAM_FORMAT_PARSER_H