Organized api/internal into subdirs

[bamtools.git] / src / api / internal / BamWriter_p.h

diff --git a/src/api/internal/BamWriter_p.h b/src/api/internal/BamWriter_p.h
deleted file mode 100644 (file)
index cf10941..0000000
--- a/src/api/internal/BamWriter_p.h
+++ /dev/null
@@ -1,73 +0,0 @@
-// ***************************************************************************
-// BamWriter_p.h (c) 2010 Derek Barnett
-// Marth Lab, Department of Biology, Boston College
-// ---------------------------------------------------------------------------
-// Last modified: 10 October 2011 (DB)
-// ---------------------------------------------------------------------------
-// Provides the basic functionality for producing BAM files
-// ***************************************************************************
-
-#ifndef BAMWRITER_P_H
-#define BAMWRITER_P_H
-
-//  -------------
-//  W A R N I N G
-//  -------------
-//
-// This file is not part of the BamTools API.  It exists purely as an
-// implementation detail.  This header file may change from version to
-// version without notice, or even be removed.
-//
-// We mean it.
-
-#include "api/BamAux.h"
-#include "api/internal/BgzfStream_p.h"
-#include <string>
-#include <vector>
-
-namespace BamTools {
-
-class BamAlignment;
-
-namespace Internal {
-
-class BamWriterPrivate {
-
-    // ctor & dtor
-    public:
-        BamWriterPrivate(void);
-        ~BamWriterPrivate(void);
-
-    // interface methods
-    public:
-        void Close(void);
-        std::string GetErrorString(void) const;
-        bool IsOpen(void) const;
-        bool Open(const std::string& filename,
-                  const std::string& samHeaderText,
-                  const BamTools::RefVector& referenceSequences);
-        bool SaveAlignment(const BamAlignment& al);
-        void SetWriteCompressed(bool ok);
-
-    // 'internal' methods
-    public:
-        uint32_t CalculateMinimumBin(const int begin, int end) const;
-        void CreatePackedCigar(const std::vector<BamTools::CigarOp>& cigarOperations, std::string& packedCigar);
-        void EncodeQuerySequence(const std::string& query, std::string& encodedQuery);
-        void WriteAlignment(const BamAlignment& al);
-        void WriteCoreAlignment(const BamAlignment& al);
-        void WriteMagicNumber(void);
-        void WriteReferences(const BamTools::RefVector& referenceSequences);
-        void WriteSamHeaderText(const std::string& samHeaderText);
-
-    // data members
-    private:
-        BgzfStream m_stream;
-        bool m_isBigEndian;
-        std::string m_errorString;
-};
-
-} // namespace Internal
-} // namespace BamTools
-
-#endif // BAMWRITER_P_H