Updated CMakeLists.txt files

[bamtools.git] / src / api / internal / BamReader_p.cpp

diff --git a/src/api/internal/BamReader_p.cpp b/src/api/internal/BamReader_p.cpp
index 11cba33ce177fabbc382738f99e6dcfb9b309554..a34435817d62ab039a614725b24af0dec9dd62ba 100644 (file)
--- a/src/api/internal/BamReader_p.cpp
+++ b/src/api/internal/BamReader_p.cpp
@@ -2,7 +2,7 @@
 // BamReader_p.cpp (c) 2009 Derek Barnett
 // Marth Lab, Department of Biology, Boston College
 // ---------------------------------------------------------------------------
-// Last modified: 10 October 2011 (DB)
+// Last modified: 14 November 2011 (DB)
 // ---------------------------------------------------------------------------
 // Provides the basic functionality for reading BAM files
 // ***************************************************************************
@@ -367,7 +367,6 @@ bool BamReaderPrivate::Open(const string& filename) {
 
         // open BgzfStream
         m_stream.Open(filename, IBamIODevice::ReadOnly);
-        assert(m_stream);
 
         // load BAM metadata
         LoadHeaderData();
@@ -447,11 +446,6 @@ void BamReaderPrivate::SetIndex(BamIndex* index) {
     m_randomAccessController.SetIndex(index);
 }
 
-// change the index caching behavior
-void BamReaderPrivate::SetIndexCacheMode(const BamIndex::IndexCacheMode& mode) {
-    m_randomAccessController.SetIndexCacheMode(mode);
-}
-
 // sets current region & attempts to jump to it
 // returns success/failure
 bool BamReaderPrivate::SetRegion(const BamRegion& region) {