Organized api/internal into subdirs

[bamtools.git] / src / api / internal / BamFile_p.cpp

diff --git a/src/api/internal/BamFile_p.cpp b/src/api/internal/BamFile_p.cpp
deleted file mode 100644 (file)
index 74c4ed6..0000000
--- a/src/api/internal/BamFile_p.cpp
+++ /dev/null
@@ -1,67 +0,0 @@
-// ***************************************************************************
-// BamFile_p.cpp (c) 2011 Derek Barnett
-// Marth Lab, Department of Biology, Boston College
-// ---------------------------------------------------------------------------
-// Last modified: 10 October 2011 (DB)
-// ---------------------------------------------------------------------------
-// Provides BAM file-specific IO behavior
-// ***************************************************************************
-
-#include "api/internal/BamFile_p.h"
-using namespace BamTools;
-using namespace BamTools::Internal;
-
-#include <cstdio>
-#include <iostream>
-using namespace std;
-
-BamFile::BamFile(const string& filename)
-    : ILocalIODevice()
-    , m_filename(filename)
-{ }
-
-BamFile::~BamFile(void) { }
-
-void BamFile::Close(void) {
-    if ( IsOpen() ) {
-        m_filename.clear();
-        ILocalIODevice::Close();
-    }
-}
-
-bool BamFile::IsRandomAccess(void) const {
-    return true;
-}
-
-bool BamFile::Open(const IBamIODevice::OpenMode mode) {
-
-    // make sure we're starting with a fresh file stream
-    Close();
-
-    // attempt to open FILE* depending on requested openmode
-    if ( mode == IBamIODevice::ReadOnly )
-        m_stream = fopen(m_filename.c_str(), "rb");
-    else if ( mode == IBamIODevice::WriteOnly )
-        m_stream = fopen(m_filename.c_str(), "wb");
-    else {
-        SetErrorString("BamFile::Open", "unknown open mode requested");
-        return false;
-    }
-
-    // check that we obtained a valid FILE*
-    if ( m_stream == 0 ) {
-        const string message_base = string("could not open file handle for ");
-        const string message = message_base + ( (m_filename.empty()) ? "empty filename" : m_filename );
-        SetErrorString("BamFile::Open", message);
-        return false;
-    }
-
-    // store current IO mode & return success
-    m_mode = mode;
-    return true;
-}
-
-bool BamFile::Seek(const int64_t& position) {
-    BT_ASSERT_X( m_stream, "BamFile::Seek() - null stream" );
-    return ( fseek64(m_stream, position, SEEK_SET) == 0 );
-}