Updated BamAlignment documentation, re: QueryBases field (issue #12)

[bamtools.git] / src / api / SamSequenceDictionary.h

diff --git a/src/api/SamSequenceDictionary.h b/src/api/SamSequenceDictionary.h
index e8a36003b454286f0f8c70c808b50c43bc3c1540..d267dbdac5db5182dcd9c100e076cac4298959eb 100644 (file)
--- a/src/api/SamSequenceDictionary.h
+++ b/src/api/SamSequenceDictionary.h
@@ -2,7 +2,7 @@
 // SamSequenceDictionary.h (c) 2010 Derek Barnett
 // Marth Lab, Department of Biology, Boston College
 // ---------------------------------------------------------------------------
-// Last modified: 10 October 2011
+// Last modified: 16 October 2011
 // ---------------------------------------------------------------------------
 // Provides methods for operating on a collection of SamSequence entries.
 // ***************************************************************************
@@ -12,8 +12,8 @@
 
 #include "api/api_global.h"
 #include "api/SamSequence.h"
-#include <string>
 #include <map>
+#include <string>
 #include <vector>
 
 namespace BamTools {
@@ -74,13 +74,10 @@ class API_EXPORT SamSequenceDictionary {
         SamSequenceConstIterator End(void) const;           // returns const_iterator to end()
         SamSequenceConstIterator ConstEnd(void) const;      // returns const_iterator to end()
 
-    // internal methods
-    private:
-        int IndexOf(const std::string& name) const;
-
     // data members
     private:
         SamSequenceContainer m_data;
+        std::map<std::string, size_t> m_lookupData;
 };
 
 } // namespace BamTools