// SamSequenceDictionary.h (c) 2010 Derek Barnett
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
-// Last modified: 1 October 2011
+// Last modified: 16 October 2011
// ---------------------------------------------------------------------------
// Provides methods for operating on a collection of SamSequence entries.
// ***************************************************************************
#ifndef SAM_SEQUENCE_DICTIONARY_H
#define SAM_SEQUENCE_DICTIONARY_H
-#include <api/api_global.h>
-#include <api/SamSequence.h>
-#include <string>
+#include "api/api_global.h"
+#include "api/SamSequence.h"
#include <map>
+#include <string>
#include <vector>
namespace BamTools {
SamSequenceConstIterator End(void) const; // returns const_iterator to end()
SamSequenceConstIterator ConstEnd(void) const; // returns const_iterator to end()
- // internal methods
- private:
- int IndexOf(const std::string& name) const;
-
// data members
private:
SamSequenceContainer m_data;
+ std::map<std::string, size_t> m_lookupData;
};
} // namespace BamTools