# add compiler definitions
add_definitions( -DBAMTOOLS_API_LIBRARY ) # (for proper exporting of library symbols)
+add_definitions( -fPIC ) # (attempt to force PIC compiling on CentOS, not being set on shared libs by CMake)
# list of all BamTools API source (.cpp) files
set( BamToolsAPISources
SamReadGroupDictionary.cpp
SamSequence.cpp
SamSequenceDictionary.cpp
+ internal/BamDeviceFactory_p.cpp
+ internal/BamException_p.cpp
+ internal/BamFile_p.cpp
+ internal/BamFtp_p.cpp
internal/BamHeader_p.cpp
+ internal/BamHttp_p.cpp
internal/BamIndexFactory_p.cpp
internal/BamMultiReader_p.cpp
+ internal/BamPipe_p.cpp
internal/BamRandomAccessController_p.cpp
internal/BamReader_p.cpp
internal/BamStandardIndex_p.cpp
internal/BamToolsIndex_p.cpp
internal/BamWriter_p.cpp
internal/BgzfStream_p.cpp
+ internal/ILocalIODevice_p.cpp
+ internal/IRemoteIODevice_p.cpp
internal/SamFormatParser_p.cpp
internal/SamFormatPrinter_p.cpp
internal/SamHeaderValidator_p.cpp
# create main BamTools API shared library
add_library( BamTools SHARED ${BamToolsAPISources} )
-set_target_properties( BamTools PROPERTIES SOVERSION "1.0.1" )
+set_target_properties( BamTools PROPERTIES SOVERSION "2.0.0" )
set_target_properties( BamTools PROPERTIES OUTPUT_NAME "bamtools" )
# create main BamTools API static library
target_link_libraries( BamTools-static z )
# set library install destinations
-install( TARGETS BamTools LIBRARY DESTINATION "lib/bamtools")
+install( TARGETS BamTools LIBRARY DESTINATION "lib/bamtools" RUNTIME DESTINATION "bin")
install( TARGETS BamTools-static ARCHIVE DESTINATION "lib/bamtools")
# export API headers
include(../ExportHeader.cmake)
set(ApiIncludeDir "api")
ExportHeader(APIHeaders api_global.h ${ApiIncludeDir})
+ExportHeader(APIHeaders BamAlgorithms.h ${ApiIncludeDir})
ExportHeader(APIHeaders BamAlignment.h ${ApiIncludeDir})
ExportHeader(APIHeaders BamAux.h ${ApiIncludeDir})
ExportHeader(APIHeaders BamConstants.h ${ApiIncludeDir})
ExportHeader(APIHeaders BamMultiReader.h ${ApiIncludeDir})
ExportHeader(APIHeaders BamReader.h ${ApiIncludeDir})
ExportHeader(APIHeaders BamWriter.h ${ApiIncludeDir})
+ExportHeader(APIHeaders IBamIODevice.h ${ApiIncludeDir})
ExportHeader(APIHeaders SamConstants.h ${ApiIncludeDir})
ExportHeader(APIHeaders SamHeader.h ${ApiIncludeDir})
ExportHeader(APIHeaders SamProgram.h ${ApiIncludeDir})
ExportHeader(APIHeaders SamReadGroupDictionary.h ${ApiIncludeDir})
ExportHeader(APIHeaders SamSequence.h ${ApiIncludeDir})
ExportHeader(APIHeaders SamSequenceDictionary.h ${ApiIncludeDir})
+
+set(AlgorithmsIncludeDir "api/algorithms")
+ExportHeader(AlgorithmsHeaders algorithms/Sort.h ${AlgorithmsIncludeDir})