add_definitions( -DBAMTOOLS_API_LIBRARY ) # (for proper exporting of library symbols)
add_definitions( -fPIC ) # (attempt to force PIC compiling on CentOS, not being set on shared libs by CMake)
-# list of all BamTools API source (.cpp) files
+# fetch all internal source files
+add_subdirectory ( internal )
+
+# make list of all API source files
set( BamToolsAPISources
BamAlignment.cpp
BamMultiReader.cpp
SamReadGroupDictionary.cpp
SamSequence.cpp
SamSequenceDictionary.cpp
- internal/bam/BamHeader_p.cpp
- internal/bam/BamMultiReader_p.cpp
- internal/bam/BamRandomAccessController_p.cpp
- internal/bam/BamReader_p.cpp
- internal/bam/BamWriter_p.cpp
- internal/index/BamIndexFactory_p.cpp
- internal/index/BamStandardIndex_p.cpp
- internal/index/BamToolsIndex_p.cpp
- internal/io/BamDeviceFactory_p.cpp
- internal/io/BamFile_p.cpp
- internal/io/BamFtp_p.cpp
- internal/io/BamHttp_p.cpp
- internal/io/BamPipe_p.cpp
- internal/io/BgzfStream_p.cpp
- internal/io/ILocalIODevice_p.cpp
- internal/io/IRemoteIODevice_p.cpp
- internal/sam/SamFormatParser_p.cpp
- internal/sam/SamFormatPrinter_p.cpp
- internal/sam/SamHeaderValidator_p.cpp
- internal/utils/BamException_p.cpp
+ ${InternalSources}
)
# create main BamTools API shared library
add_library( BamTools SHARED ${BamToolsAPISources} )
-set_target_properties( BamTools PROPERTIES SOVERSION "2.0.5" )
-set_target_properties( BamTools PROPERTIES OUTPUT_NAME "bamtools" )
+set_target_properties( BamTools PROPERTIES
+ SOVERSION "2.2.3"
+ OUTPUT_NAME "bamtools" )
# create main BamTools API static library
add_library( BamTools-static STATIC ${BamToolsAPISources} )
-set_target_properties( BamTools-static PROPERTIES OUTPUT_NAME "bamtools" )
-set_target_properties( BamTools-static PROPERTIES PREFIX "lib" )
+set_target_properties( BamTools-static PROPERTIES
+ OUTPUT_NAME "bamtools"
+ PREFIX "lib" )
+
+# link libraries automatically with zlib (and Winsock2, if applicable)
+if( _WIN32 )
+ set( APILibs z ws2_32 )
+else( _WIN32 )
+ set( APILibs z )
+endif( _WIN32 )
-# link libraries with zlib automatically
-target_link_libraries( BamTools z )
-target_link_libraries( BamTools-static z )
+target_link_libraries( BamTools ${APILibs} )
+target_link_libraries( BamTools-static ${APILibs} )
# set library install destinations
install( TARGETS BamTools LIBRARY DESTINATION "lib/bamtools" RUNTIME DESTINATION "bin")
include(../ExportHeader.cmake)
set(ApiIncludeDir "api")
ExportHeader(APIHeaders api_global.h ${ApiIncludeDir})
-ExportHeader(APIHeaders BamAlgorithms.h ${ApiIncludeDir})
+ExportHeader(APIHeaders BamAlgorithms.h ${ApiIncludeDir})
ExportHeader(APIHeaders BamAlignment.h ${ApiIncludeDir})
ExportHeader(APIHeaders BamAux.h ${ApiIncludeDir})
ExportHeader(APIHeaders BamConstants.h ${ApiIncludeDir})
ExportHeader(APIHeaders SamSequence.h ${ApiIncludeDir})
ExportHeader(APIHeaders SamSequenceDictionary.h ${ApiIncludeDir})
-set(AlgorithmsIncludeDir "api/algorithms")
-ExportHeader(AlgorithmsHeaders algorithms/Sort.h ${AlgorithmsIncludeDir})
+set( AlgorithmsIncludeDir "api/algorithms" )
+ExportHeader( AlgorithmsHeaders algorithms/Sort.h ${AlgorithmsIncludeDir} )