add_definitions( -DBAMTOOLS_API_LIBRARY ) # (for proper exporting of library symbols)
add_definitions( -fPIC ) # (attempt to force PIC compiling on CentOS, not being set on shared libs by CMake)
-# list of all BamTools API source (.cpp) files
+# fetch all internal source files
+add_subdirectory ( internal )
+
+# make list of all API source files
set( BamToolsAPISources
BamAlignment.cpp
BamMultiReader.cpp
SamReadGroupDictionary.cpp
SamSequence.cpp
SamSequenceDictionary.cpp
- internal/BamDeviceFactory_p.cpp
- internal/BamException_p.cpp
- internal/BamFile_p.cpp
- internal/BamFtp_p.cpp
- internal/BamHeader_p.cpp
- internal/BamHttp_p.cpp
- internal/BamIndexFactory_p.cpp
- internal/BamMultiReader_p.cpp
- internal/BamPipe_p.cpp
- internal/BamRandomAccessController_p.cpp
- internal/BamReader_p.cpp
- internal/BamStandardIndex_p.cpp
- internal/BamToolsIndex_p.cpp
- internal/BamWriter_p.cpp
- internal/BgzfStream_p.cpp
- internal/ILocalIODevice_p.cpp
- internal/IRemoteIODevice_p.cpp
- internal/SamFormatParser_p.cpp
- internal/SamFormatPrinter_p.cpp
- internal/SamHeaderValidator_p.cpp
+ ${InternalSources}
)
# create main BamTools API shared library
add_library( BamTools SHARED ${BamToolsAPISources} )
set_target_properties( BamTools PROPERTIES
- SOVERSION "2.0.5"
+ SOVERSION "2.2.3"
OUTPUT_NAME "bamtools" )
-target_link_libraries( BamTools z )
-install( TARGETS BamTools LIBRARY DESTINATION "lib/bamtools" RUNTIME DESTINATION "bin" )
# create main BamTools API static library
add_library( BamTools-static STATIC ${BamToolsAPISources} )
-set_target_properties( BamTools-static PROPERTIES
- OUTPUT_NAME "bamtools"
+set_target_properties( BamTools-static PROPERTIES
+ OUTPUT_NAME "bamtools"
PREFIX "lib" )
-target_link_libraries( BamTools-static z )
-install( TARGETS BamTools-static ARCHIVE DESTINATION "lib/bamtools" )
+
+# link libraries automatically with zlib (and Winsock2, if applicable)
+if( _WIN32 )
+ set( APILibs z ws2_32 )
+else( _WIN32 )
+ set( APILibs z )
+endif( _WIN32 )
+
+target_link_libraries( BamTools ${APILibs} )
+target_link_libraries( BamTools-static ${APILibs} )
+
+# set library install destinations
+install( TARGETS BamTools LIBRARY DESTINATION "lib/bamtools" RUNTIME DESTINATION "bin")
+install( TARGETS BamTools-static ARCHIVE DESTINATION "lib/bamtools")
# export API headers
-include( ../ExportHeader.cmake )
-set( ApiIncludeDir "api" )
-ExportHeader( APIHeaders api_global.h ${ApiIncludeDir} )
-ExportHeader( APIHeaders BamAlgorithms.h ${ApiIncludeDir} )
-ExportHeader( APIHeaders BamAlignment.h ${ApiIncludeDir} )
-ExportHeader( APIHeaders BamAux.h ${ApiIncludeDir} )
-ExportHeader( APIHeaders BamConstants.h ${ApiIncludeDir} )
-ExportHeader( APIHeaders BamIndex.h ${ApiIncludeDir} )
-ExportHeader( APIHeaders BamMultiReader.h ${ApiIncludeDir} )
-ExportHeader( APIHeaders BamReader.h ${ApiIncludeDir} )
-ExportHeader( APIHeaders BamWriter.h ${ApiIncludeDir} )
-ExportHeader( APIHeaders IBamIODevice.h ${ApiIncludeDir} )
-ExportHeader( APIHeaders SamConstants.h ${ApiIncludeDir} )
-ExportHeader( APIHeaders SamHeader.h ${ApiIncludeDir} )
-ExportHeader( APIHeaders SamProgram.h ${ApiIncludeDir} )
-ExportHeader( APIHeaders SamProgramChain.h ${ApiIncludeDir} )
-ExportHeader( APIHeaders SamReadGroup.h ${ApiIncludeDir} )
-ExportHeader( APIHeaders SamReadGroupDictionary.h ${ApiIncludeDir} )
-ExportHeader( APIHeaders SamSequence.h ${ApiIncludeDir} )
-ExportHeader( APIHeaders SamSequenceDictionary.h ${ApiIncludeDir} )
+include(../ExportHeader.cmake)
+set(ApiIncludeDir "api")
+ExportHeader(APIHeaders api_global.h ${ApiIncludeDir})
+ExportHeader(APIHeaders BamAlgorithms.h ${ApiIncludeDir})
+ExportHeader(APIHeaders BamAlignment.h ${ApiIncludeDir})
+ExportHeader(APIHeaders BamAux.h ${ApiIncludeDir})
+ExportHeader(APIHeaders BamConstants.h ${ApiIncludeDir})
+ExportHeader(APIHeaders BamIndex.h ${ApiIncludeDir})
+ExportHeader(APIHeaders BamMultiReader.h ${ApiIncludeDir})
+ExportHeader(APIHeaders BamReader.h ${ApiIncludeDir})
+ExportHeader(APIHeaders BamWriter.h ${ApiIncludeDir})
+ExportHeader(APIHeaders IBamIODevice.h ${ApiIncludeDir})
+ExportHeader(APIHeaders SamConstants.h ${ApiIncludeDir})
+ExportHeader(APIHeaders SamHeader.h ${ApiIncludeDir})
+ExportHeader(APIHeaders SamProgram.h ${ApiIncludeDir})
+ExportHeader(APIHeaders SamProgramChain.h ${ApiIncludeDir})
+ExportHeader(APIHeaders SamReadGroup.h ${ApiIncludeDir})
+ExportHeader(APIHeaders SamReadGroupDictionary.h ${ApiIncludeDir})
+ExportHeader(APIHeaders SamSequence.h ${ApiIncludeDir})
+ExportHeader(APIHeaders SamSequenceDictionary.h ${ApiIncludeDir})
set( AlgorithmsIncludeDir "api/algorithms" )
ExportHeader( AlgorithmsHeaders algorithms/Sort.h ${AlgorithmsIncludeDir} )