Removed index cache mode

[bamtools.git] / src / api / BamReader.h

diff --git a/src/api/BamReader.h b/src/api/BamReader.h
index ce04af65a9edbd364c323dba22acde565dd3ea0c..fb9064d9994d08a4c2afe177b2ca205c1841da4c 100644 (file)
--- a/src/api/BamReader.h
+++ b/src/api/BamReader.h
@@ -2,7 +2,7 @@
 // BamReader.h (c) 2009 Derek Barnett, Michael Str�mberg\r
 // Marth Lab, Department of Biology, Boston College\r
 // ---------------------------------------------------------------------------\r
-// Last modified: 7 October 2011 (DB)\r
+// Last modified: 10 October 2011 (DB)\r
 // ---------------------------------------------------------------------------\r
 // Provides read access to BAM files.\r
 // ***************************************************************************\r
@@ -10,10 +10,10 @@
 #ifndef BAMREADER_H\r
 #define BAMREADER_H\r
 \r
-#include <api/api_global.h>\r
-#include <api/BamAlignment.h>\r
-#include <api/BamIndex.h>\r
-#include <api/SamHeader.h>\r
+#include "api/api_global.h"\r
+#include "api/BamAlignment.h"\r
+#include "api/BamIndex.h"\r
+#include "api/SamHeader.h"\r
 #include <string>\r
 \r
 namespace BamTools {\r
@@ -99,8 +99,6 @@ class API_EXPORT BamReader {
         bool OpenIndex(const std::string& indexFilename);\r
         // sets a custom BamIndex on this reader\r
         void SetIndex(BamIndex* index);\r
-        // changes the caching behavior of the index data\r
-        void SetIndexCacheMode(const BamIndex::IndexCacheMode& mode);\r
 \r
         // ----------------------\r
         // error handling\r
@@ -108,11 +106,6 @@ class API_EXPORT BamReader {
 \r
         // returns a human-readable description of the last error that occurred\r
         std::string GetErrorString(void) const;\r
-\r
-    // deprecated methods\r
-    public:\r
-        // returns true if index data is available\r
-        bool IsIndexLoaded(void) const;\r
         \r
     // private implementation\r
     private:\r