merge with remoteio branch

[bamtools.git] / src / api / BamReader.cpp

diff --git a/src/api/BamReader.cpp b/src/api/BamReader.cpp
index 6e4a10f80ece0b7b6cfd0d55c125f6dd509bf012..ae2adec94e498dadc97115807ab0d52dbe178804 100644 (file)
--- a/src/api/BamReader.cpp
+++ b/src/api/BamReader.cpp
@@ -2,13 +2,13 @@
 // BamReader.cpp (c) 2009 Derek Barnett, Michael Str�mberg
 // Marth Lab, Department of Biology, Boston College
 // ---------------------------------------------------------------------------
-// Last modified: 10 October 2011 (DB)
+// Last modified: 25 October 2011 (DB)
 // ---------------------------------------------------------------------------
 // Provides read access to BAM files.
 // ***************************************************************************
 
 #include "api/BamReader.h"
-#include "api/internal/BamReader_p.h"
+#include "api/internal/bam/BamReader_p.h"
 using namespace BamTools;
 using namespace BamTools::Internal;
 
@@ -310,19 +310,6 @@ void BamReader::SetIndex(BamIndex* index) {
     d->SetIndex(index);
 }
 
-/*! \fn void BamReader::SetIndexCacheMode(const BamIndex::IndexCacheMode& mode)
-    \brief Changes the caching behavior of the index data.
-
-    Default mode is BamIndex::LimitedIndexCaching.
-
-    \param[in] mode desired cache mode for index, see BamIndex::IndexCacheMode for
-                    description of the available cache modes
-    \sa HasIndex()
-*/
-void BamReader::SetIndexCacheMode(const BamIndex::IndexCacheMode& mode) {
-    d->SetIndexCacheMode(mode);
-}
-
 /*! \fn bool BamReader::SetRegion(const BamRegion& region)
     \brief Sets a target region of interest