// BamReader.cpp (c) 2009 Derek Barnett, Michael Str�mberg
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
-// Last modified: 10 October 2011 (DB)
+// Last modified: 25 October 2011 (DB)
// ---------------------------------------------------------------------------
// Provides read access to BAM files.
// ***************************************************************************
#include "api/BamReader.h"
-#include "api/internal/BamReader_p.h"
+#include "api/internal/bam/BamReader_p.h"
using namespace BamTools;
using namespace BamTools::Internal;
d->SetIndex(index);
}
-/*! \fn void BamReader::SetIndexCacheMode(const BamIndex::IndexCacheMode& mode)
- \brief Changes the caching behavior of the index data.
-
- Default mode is BamIndex::LimitedIndexCaching.
-
- \param[in] mode desired cache mode for index, see BamIndex::IndexCacheMode for
- description of the available cache modes
- \sa HasIndex()
-*/
-void BamReader::SetIndexCacheMode(const BamIndex::IndexCacheMode& mode) {
- d->SetIndexCacheMode(mode);
-}
-
/*! \fn bool BamReader::SetRegion(const BamRegion& region)
\brief Sets a target region of interest