// Marth Lab, Department of Biology, Boston College
// All rights reserved.
// ---------------------------------------------------------------------------
-// Last modified: 13 October 2010 (DB)
+// Last modified: 19 November 2010 (DB)
// ---------------------------------------------------------------------------
// Uses BGZF routines were adapted from the bgzf.c code developed at the Broad
// Institute.
// Provides the basic functionality for reading BAM files
// ***************************************************************************
-// C++ includes
+#include <api/BamReader.h>
+#include <api/BGZF.h>
+using namespace BamTools;
+
#include <algorithm>
+#include <iostream>
#include <iterator>
#include <string>
#include <vector>
-#include <iostream>
-#include "BGZF.h"
-#include "BamReader.h"
-using namespace BamTools;
using namespace std;
struct BamReader::BamReaderPrivate {