// Marth Lab, Department of Biology, Boston College
// All rights reserved.
// ---------------------------------------------------------------------------
-// Last modified: 22 November 2010 (DB)
+// Last modified: 11 January 2011 (DB)
// ---------------------------------------------------------------------------
// Provides the basic functionality for reading BAM files
// ***************************************************************************
bool BamReader::GetNextAlignmentCore(BamAlignment& bAlignment) { return d->GetNextAlignmentCore(bAlignment); }
// access auxiliary data
+SamHeader BamReader::GetHeader(void) const { return d->GetSamHeader(); }
const string BamReader::GetHeaderText(void) const { return d->GetHeaderText(); }
int BamReader::GetReferenceCount(void) const { return d->References.size(); }
const RefVector& BamReader::GetReferenceData(void) const { return d->References; }