Regression fixed: wasn't properly merging from multiple BAMs

[bamtools.git] / src / api / BamMultiReader.h

diff --git a/src/api/BamMultiReader.h b/src/api/BamMultiReader.h
index 1b1c27021bc457962d17160b019619932d4ecee6..ea068d0c0ad58a9736fde8b4abb34de6632fcefe 100644 (file)
--- a/src/api/BamMultiReader.h
+++ b/src/api/BamMultiReader.h
@@ -2,7 +2,7 @@
 // BamMultiReader.h (c) 2010 Erik Garrison, Derek Barnett
 // Marth Lab, Department of Biology, Boston College
 // ---------------------------------------------------------------------------
-// Last modified: 7 October 2011 (DB)
+// Last modified: 10 October 2011 (DB)
 // ---------------------------------------------------------------------------
 // Convenience class for reading multiple BAM files.
 // ***************************************************************************
@@ -10,8 +10,8 @@
 #ifndef BAMMULTIREADER_H
 #define BAMMULTIREADER_H
 
-#include <api/api_global.h>
-#include <api/BamReader.h>
+#include "api/api_global.h"
+#include "api/BamReader.h"
 #include <map>
 #include <sstream>
 #include <string>
@@ -97,8 +97,6 @@ class API_EXPORT BamMultiReader {
         bool LocateIndexes(const BamIndex::IndexType& preferredType = BamIndex::STANDARD);
         // opens index files for current BAM files.
         bool OpenIndexes(const std::vector<std::string>& indexFilenames);
-        // changes the caching behavior of the index data
-        void SetIndexCacheMode(const BamIndex::IndexCacheMode& mode);
 
         // ----------------------
         // error handling