// BamMultiReader.cpp (c) 2010 Erik Garrison, Derek Barnett
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
-// Last modified: 10 October 2011 (DB)
+// Last modified: 25 October 2011 (DB)
// ---------------------------------------------------------------------------
// Convenience class for reading multiple BAM files.
//
// precludes the need to sort merged files.
// ***************************************************************************
-#include <api/BamMultiReader.h>
-#include <api/internal/BamMultiReader_p.h>
+#include "api/BamMultiReader.h"
+#include "api/internal/bam/BamMultiReader_p.h"
using namespace BamTools;
#include <string>
return d->Rewind();
}
-/*! \fn void BamMultiReader::SetIndexCacheMode(const BamIndex::IndexCacheMode& mode)
- \brief Changes the caching behavior of the index data.
-
- Default mode is BamIndex::LimitedIndexCaching.
-
- \param[in] mode desired cache mode for index, see BamIndex::IndexCacheMode for
- description of the available cache modes
- \sa HasIndex(), BamReader::SetIndexCacheMode()
-*/
-void BamMultiReader::SetIndexCacheMode(const BamIndex::IndexCacheMode& mode) {
- d->SetIndexCacheMode(mode);
-}
-
/*! \fn bool BamMultiReader::SetRegion(const BamRegion& region)
\brief Sets a target region of interest