// BamIndex.h (c) 2009 Derek Barnett
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
-// Last modified: 6 October 2011 (DB)
+// Last modified: 9 October 2011 (DB)
// ---------------------------------------------------------------------------
// Provides basic BAM index interface
// ***************************************************************************
It is exposed to the public API to allow advanced users to implement
their own custom indexing schemes.
-
- More documentation on methods & enums coming soon.
*/
class API_EXPORT BamIndex {
// change the index caching behavior
virtual void SetCacheMode(const BamIndex::IndexCacheMode& mode) =0;
+ //! \cond
+
// internal methods
protected:
void SetErrorString(const std::string& where, const std::string& what) const {
protected:
Internal::BamReaderPrivate* m_reader; // copy, not owned
mutable std::string m_errorString;
+
+ //! \endcond
};
} // namespace BamTools