// Marth Lab, Department of Biology, Boston College
// All rights reserved.
// ---------------------------------------------------------------------------
-// Last modified: 21 October 2010 (DB)
+// Last modified: 19 November 2010 (DB)
// ---------------------------------------------------------------------------
// Provides index functionality - both for the default (standardized) BAM
// index format (.bai) as well as a BamTools-specific (nonstandard) index
// format (.bti).
// ***************************************************************************
+#include <api/BamIndex.h>
+#include <api/BamReader.h>
+#include <api/BGZF.h>
+using namespace BamTools;
+
#include <cstdio>
#include <cstdlib>
#include <algorithm>
#include <iostream>
#include <map>
-#include "BamIndex.h"
-#include "BamReader.h"
-#include "BGZF.h"
using namespace std;
-using namespace BamTools;
// -------------------------------
// BamIndex implementation