Minor cleanup

[bamtools.git] / src / api / BamAlignment.h

diff --git a/src/api/BamAlignment.h b/src/api/BamAlignment.h
index 11233781b9a4995806e5a546bfb082a92a721406..aa1d940d14c4ea8b8ddf3c2ee477804228744593 100644 (file)
--- a/src/api/BamAlignment.h
+++ b/src/api/BamAlignment.h
@@ -1,9 +1,8 @@
 // ***************************************************************************
 // BamAlignment.h (c) 2009 Derek Barnett
 // Marth Lab, Department of Biology, Boston College
-// All rights reserved.
 // ---------------------------------------------------------------------------
-// Last modified: 19 April 2011 (DB)
+// Last modified: 22 April 2011 (DB)
 // ---------------------------------------------------------------------------
 // Provides the BamAlignment data structure
 // ***************************************************************************
@@ -159,9 +158,22 @@ struct API_EXPORT BamAlignment {
         int32_t     InsertSize;         // mate-pair insert size
         std::string Filename;           // name of BAM file which this alignment comes from
 
+    //! \cond
+    // internal utility methods
+    private:
+        bool FindTag(const std::string& tag,
+                     char*& pTagData,
+                     const unsigned int& tagDataLength,
+                     unsigned int& numBytesParsed) const;
+        bool IsValidSize(const std::string& tag,
+                         const std::string& type) const;
+        bool SkipToNextTag(const char storageType,
+                           char*& pTagData,
+                           unsigned int& numBytesParsed) const;
+
     // internal data
     private:
-        //! \cond
+
         struct BamAlignmentSupportData {
       
             // data members
@@ -184,7 +196,7 @@ struct API_EXPORT BamAlignment {
         BamAlignmentSupportData SupportData;
         friend class Internal::BamReaderPrivate;
         friend class Internal::BamWriterPrivate;
-        //! \endcond
+    //! \endcond
 };
 
 typedef std::vector<BamAlignment> BamAlignmentVector;