public:
- SplitMatrix(string, string, string, float, string, bool); //column formatted distance file, namesfile, cutoff, method
+ SplitMatrix(string, string, string, float, string, bool); //column formatted distance file, namesfile, cutoff, method, large
+ SplitMatrix(string, string, string, float, float, string, int, string); //fastafile, namefile, taxFile, taxcutoff, cutoff, method, processors, outputDir
+
~SplitMatrix();
int split();
vector< map<string, string> > getDistanceFiles(); //returns map of distance files -> namefile sorted by distance file size
private:
MothurOut* m;
- string distFile, namefile, singleton, method, taxFile;
+ string distFile, namefile, singleton, method, taxFile, fastafile, outputDir;
vector< map< string, string> > dists;
- float cutoff;
+ float cutoff, distCutoff;
bool large;
+ int processors;
int splitDistance();
int splitClassify();
int splitDistanceLarge();
int splitDistanceRAM();
int splitNames(vector<set<string> >& groups);
+ int splitDistanceFileByTax(map<string, int>&, int);
+ int createDistanceFilesFromTax(map<string, int>&, int);
};
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