.. _WELCOme:
-*************
- NeuroDebian
-*************
+*********************************************
+ The Ultimate Neuroscience Software Platform
+*********************************************
NeuroDebian provides a large collection of popular neuroscience research
software for the Debian_ operating system as well as Ubuntu_ and other
derivatives. Popular packages include FSL, Freesurfer, AFNI, PyMVPA and
-:ref:`many others <pkglists>`. While we do strive to maintain a high level of
+:ref:`many others <pkg_tocs>`. While we do strive to maintain a high level of
quality, we make no guarantee that a given package works as expected, so use
them at your own risk. If you do encounter problems or would just like to thank
us, simply `send us an email <#contacts>`_.
Get NeuroDebian
===============
-Choose on which operating system you want to run NeuroDebian, and select a
-download server close to you:
-
-.. include:: sources_lists
-
-.. raw:: html
-
- <div id="reposetup" style="display:none">
-
-To enable NeuroDebian on your system, simply copy and paste the following
-commands into a terminal window:
-
-.. raw:: html
-
- <pre id="code">
- After selecting a release the setup code will be shown here.
- </pre>
-
-Once this is done, you have to update the package index and you are ready to
-install packages. Use your favorite package manager, e.g. synaptic, adept. In
-the terminal you can use :command:`apt-get`::
-
- sudo apt-get update
- sudo apt-get install mricron
-
-.. note::
-
- Not every package is available for all distributions/releases. For information
- about which package version is available for which release and architecture,
- please have a look at the corresponding package pages.
-
-.. raw:: html
-
- </div> <!-- end reposetup -->
-
- <div id="vmsetup" style="display:none">
-
-For all non-Debian operating systems the recommended way to deploy NeuroDebian
-is a `virtual appliance`_. On all modern hardware (built within the last 3-4
-years) a virtual appliance is a convenient solution to run NeuroDebian
-simultaneously with the primary operating system -- without noticable
-performance loss.
-
-1. Install NeuroDebian by first downloading this image file:
-
-.. raw:: html
-
- <div id="vmimagedownload">
- <a href="http://neuro.debian.net/debian/vm/">NeuroDebian images</a>
- </div>
-
-2. Once downloaded, import this image into your VirtualBox_ installation. If you
- do not have VirtualBox_ installed yet, visit the `VirtualBox download page
- <http://www.virtualbox.org/wiki/Downloads>`_ that provides installers for
- Windows, Linux, Mac and Solaris.
-
-3. Please read :ref:`the detailed instructions on setting up the virtual
- appliance <chap_vm>` to complete the configuration of your NeuroDebian
- environment.
-
-.. note::
-
- If you still running an older VirtualBox 3.x, download one of the image files
- listed below. These older releases are distributed as a `zip` file. Please
- extract all files from the `.zip` file, using appropriate software
- for your operating system.
-
- * `NeuroDebian 6.0.2 image (32bit)
- <http://neuro.debian.net/debian/vm/neurodebian_6.0.2_i386.zip>`_ [~545MB]
-
- * `NeuroDebian 6.0.2 image (64bit)
- <http://neuro.debian.net/debian/vm/neurodebian_6.0.2_amd64.zip>`_ [~560MB]
-
-.. raw:: html
-
- </div> <!-- end vmsetup -->
-
-.. _virtual appliance: http://en.wikipedia.org/wiki/Virtual_appliance
-.. _VirtualBox: http://www.virtualbox.org
+.. include:: reposetup.rst
.. _news:
limit: 10,
rate: 300000});
</script>
+ <div class="nojavascriptinstructions">
+ The news widget requires javascript
+ </div>
.. _identi.ca: http://identi.ca/neurodebian
.. _twitter: http://twitter.com/NeuroDebian
.. start a new list
* **Services**
-* :ref:`Software <pkglists>`
-* :ref:`Data <pkgs-by_purpose-neuroscience_datasets>`
+* :ref:`Software <pkg_tocs>`
+* :ref:`Data <toc_pkgs_for_suite_data>`
* :ref:`Appliance <chap_vm>`
.. start a new list
* **Related**
* `Debian <http://www.debian.org>`_
* `Debian Med <http://www.debian.org/devel/debian-med>`_
+* `INCF <http://software.incf.org/software/neurodebian>`_
* `NITRC <http://www.nitrc.org/projects/neurodebian>`_
.. raw:: html
projects
testimonials
testimonials-topics
+ vm_welcome
+ derivatives
+
+.. are these supposed to be visible?
+.. toctree::
+ :hidden:
+
+ machines
+ todo
+
+.. toctree::
+ :hidden:
+ :glob:
+
+ pkgs/*
+ pkglists/*
.. probably should be purged altogether
.. toctree::
:hidden:
- booth_sfn2010
- datasets
livecd
quotes-nihr01
quotes-nitrc
- sources_lists
- vm_welcome
dump
.. include:: link_names.txt
$(buttonid).html("↓↓↓");
};
- function createvmdownload(rel, mir) {
- var img_version = '6.0.5';
- var img_suffix;
- var base_url;
- var img_url;
- var md5sum_url;
- if (rel == 'win32') {
- img_suffix = 'i386';
- } else {
- img_suffix = 'amd64';
- };
- if(mir in mirrors) {
- base_url = mirrors[mir] + '/vm/';
- img_url = base_url + 'NeuroDebian_' + img_version + '_' + img_suffix + '.ova';
- md5sum_url = base_url + 'MD5SUMS';
- } else {
- return 'Internal error';
- };
- return '<blockquote><a href="' + img_url
- + '">Virtual applicance image</a> [<a title="Verify image integrity by dowloading this file and running `md5sum -c MD5SUMS`" href="'
- + md5sum_url
- + '">MD5SUM</a>, <a title="Verify authenticity of the MD5SUM file by downloading this file and running `gpg –verify MD5SUMS.gpg`" href="'
- + md5sum_url + '.gpg">MD5SUM.gpg</a>]</blockquote>' ;
-
- };
-
- function createrepourl(rel, mir) {
- if(rel in rel2name && mir in mirrors) {
-
- var retrepo = "wget -O- http://neuro.debian.net/lists/" + rel2name[rel] + "."
- + mir + " | sudo tee /etc/apt/sources.list.d/neurodebian.sources.list\n"
- + "sudo apt-key adv --recv-keys --keyserver pgp.mit.edu 2649A5A9\n";
- return retrepo;
- }
-
- };
- function updateout(rel, mir) {
- if (rel != '' && mir != '') {
- if (rel in {'win32':'', 'win64':'', 'mac':''}) {
- $('#vmimagedownload').html(createvmdownload(rel, mir));
- $('#vmsetup').slideDown();
- $('#reposetup').slideUp();
- } else {
- $('#code').text(createrepourl(rel, mir));
- $('#reposetup').slideDown();
- $('#vmsetup').slideUp();
- };
- }
- else
- {
- $('#reposetup').slideUp();
- $('#vmsetup').slideUp();
- };
- };
- $('#release').change(function() {
- var singleValues = $("#release").val();
- var mirrorVal = $("#mirror").val();
- updateout(singleValues, mirrorVal);
- });
- $('#mirror').change(function() {
- var singleValues = $("#release").val();
- var mirrorVal = $("#mirror").val();
- updateout(singleValues, mirrorVal);
- });
-
- $(document).ready(function($) {
- updateout($("#release").val(), $("#mirror").val());
- });
-
- foldbuttontoggle('morepublications');
-
-
</script>
-
-
projects / neurodebian.git / blobdiff