NeuroDebian provides a large collection of popular neuroscience research
software for the Debian_ operating system as well as Ubuntu_ and other
-derivatives. Popular packages include FSL, Freesurfer, AFNI, PyMVPA and
+derivatives. Popular packages include :ref:`AFNI <binary_pkg_afni>`,
+:ref:`FSL <binary_pkg_fsl-complete>`, :ref:`PyMVPA <binary_pkg_python-mvpa2>` and
:ref:`many others <pkg_tocs>`. While we do strive to maintain a high level of
quality, we make no guarantee that a given package works as expected, so use
-them at your own risk. If you do encounter problems or would just like to thank
-us, simply `send us an email <#contacts>`_.
+them at your own risk. If you do encounter problems or you just like to say
+thanks, simply :ref:`send us an email <chap_contacts>`.
Learn more about NeuroDebian, the goals of this project, and help us |spread|!
.. raw:: html
- <div class="linkmore"><a href="/publications.html">more publications</a></div>
+ <div class="linkmore"><a href="publications.html" name="publications">more publications</a></div>
<div class="clearer"></div>
<!-- for dynamic quote update via javascript -->
<hr />
.. raw:: html
</div><!-- randomquote -->
- <div class="linkmore"><a href="/testimonials.html">more testimonials</a></div>
+ <div class="linkmore"><a href="testimonials.html">more testimonials</a></div>
.. _Ubuntu: http://www.ubuntu.com
Get NeuroDebian
===============
-First select what kind of operating system you are using, and then choose a
-download server close to you:
-
-.. include:: sources_lists
-
-.. raw:: html
-
- <div class="nojavascriptinstructions">
- This form requires javascript. If disabled, incomplete instructions are
- displayed below</div>
- <div id="repoconfig">
- <div class="nojavascriptinstructions">
- Instructions for Debian-derived systems
- </div>
- <p>Select desired components:<br />
- <table><tr>
- <td><input type="radio" name="components" value="libre"></td>
- <td><strong>only</strong> software with guaranteed freedoms<br />
- <span style=font-size:75%>all packages are
- <a href="http://www.debian.org/social_contract#guidelines">DSFG</a>-compliant,
- with permission to use, modify, re-distribute under any condition</span></td></tr>
- <tr><td><input type="radio" name="components" value="full"></td>
- <td>all software<br />
- <span style=font-size:75%>
- individual packages may have restrictive licenses and you are required to
- check license-compliance manually
- </span></td></tr>
- </table>
- <div id="reposetup">
-
-You can enable NeuroDebian on your system by simply copying and pasting the
-following two commands into a terminal window. This will add the NeuroDebian
-repository to your native package management system, and you will be able to
-install neuroscience software the same way as any other package.
-
-.. raw:: html
-
- <pre id="code">
- After selecting a release the setup code will be shown here.
- </pre>
-
-Now you can update the package index and you are ready to install packages.
-Of course you can use your favorite package manager (e.g. synaptic, adept)
-for this. In the terminal you can use :command:`apt-get`::
-
- sudo apt-get update
- sudo apt-get install mricron
-
-You are ready to go -- enjoy NeuroDebian!
-
-.. note::
-
- Not every package is available for all distributions/releases. For information
- about which package version is available for which release and architecture,
- please have a look at the corresponding package pages.
-
-.. raw:: html
-
- </div> <!-- end reposetup -->
- </div> <!-- end repoconfig -->
-
- <div id="vmsetup">
- <div class="nojavascriptinstructions">
- Instructions for non-Debian systems
- </div>
-
-For all non-Debian operating systems we recommend to deploy NeuroDebian as a
-`virtual appliance`_ (virtual machine) -- this will only take a few minutes.
-On all modern hardware (built within
-the last 3-4 years) a virtual appliance is a convenient solution to run
-NeuroDebian simultaneously with the primary operating system -- without
-noticeable performance loss. To start using NeuroDebian:
-
-1. Download this image file:
-
-.. raw:: html
-
- <div id="vmimagedownload">
- <a href="http://neuro.debian.net/debian/vm/">NeuroDebian images</a>
- </div>
-
-2. Import this image into VirtualBox_. If you do not have VirtualBox_
- installed yet, visit the `VirtualBox download page
- <http://www.virtualbox.org/wiki/Downloads>`_ and get an installer for your
- system (installers for Windows, Linux, Mac and Solaris are available).
-
-3. Finish the configuration by following :ref:`the instructions on setting up
- the virtual appliance <chap_vm>`. `[Virtual machine
- setup video tutorial] <http://www.youtube.com/watch?v=eqfjKV5XaTE>`_
-
-
-
-
-You are ready to go -- enjoy NeuroDebian!
-
-.. note::
-
- If you still running an older VirtualBox 3.x, download one of the image files
- listed below. These older releases are distributed as a `zip` file. Please
- extract all files from the `.zip` file, using appropriate software
- for your operating system.
-
- * `NeuroDebian 6.0.2 image (32bit)
- <http://neuro.debian.net/debian/vm/neurodebian_6.0.2_i386.zip>`_ [~545MB]
-
- * `NeuroDebian 6.0.2 image (64bit)
- <http://neuro.debian.net/debian/vm/neurodebian_6.0.2_amd64.zip>`_ [~560MB]
-
-.. raw:: html
-
- </div> <!-- end vmsetup -->
-
-.. _virtual appliance: http://en.wikipedia.org/wiki/Virtual_appliance
-.. _VirtualBox: http://www.virtualbox.org
+.. include:: reposetup.rst
.. _news:
.. raw:: html
- <script src="_static/jquery.livetwitter.min.js"></script>
- <div id="identica_widget"></div>
- <script type="text/javascript">
- $("#identica_widget").liveTwitter('neurodebian',
- {service: 'identi.ca',
- mode: 'user_timeline',
- limit: 10,
- rate: 300000});
- </script>
+ <a class="twitter-timeline" href="https://twitter.com/NeuroDebian"
+ data-widget-id="360194288006606848"
+ data-link-color="#820430"
+ height="150px"
+ data-show-replies="false"
+ data-chrome="noheader nofooter transparent">Tweets by @NeuroDebian</a>
+ <script>!function(d,s,id){var js,fjs=d.getElementsByTagName(s)[0],p=/^http:/.test(d.location)?'http':'https';if(!d.getElementById(id)){js=d.createElement(s);js.id=id;js.src=p+"://platform.twitter.com/widgets.js";fjs.parentNode.insertBefore(js,fjs);}}(document,"script","twitter-wjs");</script>
+
<div class="nojavascriptinstructions">
The news widget requires javascript
</div>
<hr />
<div id="sitemap">
+ <!-- Some anchors to orient users of old-website urls -->
+ <a name="acknowledgements"/>
+ <a name="contacts"/>
+ <a name="the-team"/>
+ <a name="debian-installation"/>
+ <a name="virtual-machine"/>
+ <a name="ways-to-use-neurodebian"> </a>
* **About**
-* :ref:`Team <chap_team>`
-* :ref:`chap_popularity`
+* :ref:`The Team <chap_team>`
* :ref:`FAQ <faq>`
* :ref:`Blog <blog>`
+* :ref:`chap_popularity`
* :ref:`chap_publications`
+* :ref:`chap_acknowledgements`
* :ref:`testimonials`
* :ref:`coffeeart`
* **Services**
* :ref:`Software <pkg_tocs>`
-* :ref:`Data <toc_pkgs_for_suite_data>`
+* :ref:`Data <toc_pkgs_for_release_data>`
* :ref:`Appliance <chap_vm>`
+* :ref:`Mirrors <chap_mirrors_stats>`
.. start a new list
* **Community**
+* :ref:`Contacts <chap_contacts>`
* :ref:`Mailing lists <chap_mailinglists>`
* `OpenHatch <https://openhatch.org/+projects/NeuroDebian>`_
* `Identi.ca <http://identi.ca/neurodebian>`_
blog/index
faq
+ thanks
+ popularity
+ about
pkgs
spread
vm
livecd
quotes-nihr01
quotes-nitrc
- dump
.. include:: link_names.txt
.. include:: substitutions.txt
$(buttonid).html("↓↓↓");
};
- function createvmdownload(rel, mir) {
- var img_version = '6.0.5';
- var img_suffix;
- var base_url;
- var img_url;
- var md5sum_url;
- if (rel == 'win32') {
- img_suffix = 'i386';
- } else {
- img_suffix = 'amd64';
- };
- if(mir in mirrors) {
- base_url = mirrors[mir] + '/vm/';
- img_url = base_url + 'NeuroDebian_' + img_version + '_' + img_suffix + '.ova';
- md5sum_url = base_url + 'MD5SUMS';
- } else {
- return 'Internal error';
- };
- return '<blockquote><a href="' + img_url
- + '">Virtual applicance image</a> [<a title="Verify image integrity by dowloading this file and running `md5sum -c MD5SUMS`" href="'
- + md5sum_url
- + '">MD5SUM</a>, <a title="Verify authenticity of the MD5SUM file by downloading this file and running `gpg –verify MD5SUMS.gpg`" href="'
- + md5sum_url + '.gpg">MD5SUM.gpg</a>]</blockquote>' ;
-
- };
-
- function createrepourl(rel, mir, comp) {
- if(mir in mirrors) {
- var retrepo = "wget -O- http://neuro.debian.net/lists/" + rel + "."
- + mir + "." + comp + " | sudo tee /etc/apt/sources.list.d/neurodebian.sources.list\n"
- + "sudo apt-key adv --recv-keys --keyserver pgp.mit.edu 2649A5A9\n";
- return retrepo;
- }
-
- };
-
- function update_by_form() {
- var rel = $("#release").val();
- var mir = $("#mirror").val();
- var comp = $('input[name="components"]:checked').val();
- if (rel != '' && mir != '') {
- if (rel in {'win32':'', 'win64':'', 'mac':''}) {
- $('#vmimagedownload').html(createvmdownload(rel, mir));
- $('#vmsetup').slideDown();
- $('#repoconfig').slideUp();
- } else {
- $('#vmsetup').slideUp();
- $('#repoconfig').slideDown();
- if (comp == undefined) {
- $('#reposetup').slideUp();
- } else {
- $('#code').text(createrepourl(rel, mir, comp));
- $('#reposetup').slideDown();
- }
- };
- }
- else
- {
- $('#repoconfig').slideUp();
- $('#vmsetup').slideUp();
- };
- };
-
- $(document).ready(function($) {
- update_by_form();
- $('#repoconfig').hide()
- $('#reposetup').hide();
- $('#vmsetup').hide()
- $('#release').change(update_by_form);
- $('#mirror').change(update_by_form);
- $('input[name=components]:radio').change(update_by_form);
- });
-
</script>
projects / neurodebian.git / blobdiff