NeuroDebian provides a large collection of popular neuroscience research
software for the Debian_ operating system as well as Ubuntu_ and other
derivatives. Popular packages include FSL, Freesurfer, AFNI, PyMVPA and
-:ref:`many others <pkglists>`. While we do strive to maintain a high level of
+:ref:`many others <pkg_tocs>`. While we do strive to maintain a high level of
quality, we make no guarantee that a given package works as expected, so use
them at your own risk. If you do encounter problems or would just like to thank
us, simply `send us an email <#contacts>`_.
Get NeuroDebian
===============
-Choose on which operating system you want to run NeuroDebian, and select a
+First select what kind of operating system you are using, and then choose a
download server close to you:
.. include:: sources_lists
.. raw:: html
- <div id="reposetup" style="display:none">
-
-To enable NeuroDebian on your system, simply copy and paste the following
-commands into a terminal window:
+ <div class="nojavascriptinstructions">
+ This form requires javascript. If disabled, incomplete instructions are
+ displayed below</div>
+ <div id="repoconfig">
+ <div class="nojavascriptinstructions">
+ Instructions for Debian-derived systems
+ </div>
+ <p>Select desired components:<br />
+ <table><tr>
+ <td><input type="radio" name="components" value="libre"></td>
+ <td><strong>only</strong> software with guaranteed freedoms<br />
+ <span style=font-size:75%>all packages are
+ <a href="http://www.debian.org/social_contract#guidelines">DSFG</a>-compliant,
+ with permission to use, modify, re-distribute under any condition</span></td></tr>
+ <tr><td><input type="radio" name="components" value="full"></td>
+ <td>all software<br />
+ <span style=font-size:75%>
+ individual packages may have restrictive licenses and you are required to
+ check license-compliance manually
+ </span></td></tr>
+ </table>
+ <div id="reposetup">
+
+You can enable NeuroDebian on your system by simply copying and pasting the
+following two commands into a terminal window. This will add the NeuroDebian
+repository to your native package management system, and you will be able to
+install neuroscience software the same way as any other package.
.. raw:: html
After selecting a release the setup code will be shown here.
</pre>
-Once this is done, you have to update the package index and you are ready to
-install packages. Use your favorite package manager, e.g. synaptic, adept. In
-the terminal you can use :command:`apt-get`::
+Now you can update the package index and you are ready to install packages.
+Of course you can use your favorite package manager (e.g. synaptic, adept)
+for this. In the terminal you can use :command:`apt-get`::
sudo apt-get update
sudo apt-get install mricron
+You are ready to go -- enjoy NeuroDebian!
+
.. note::
Not every package is available for all distributions/releases. For information
.. raw:: html
</div> <!-- end reposetup -->
+ </div> <!-- end repoconfig -->
- <div id="vmsetup" style="display:none">
+ <div id="vmsetup">
+ <div class="nojavascriptinstructions">
+ Instructions for non-Debian systems
+ </div>
-For all non-Debian operating systems the recommended way to deploy NeuroDebian
-is a `virtual appliance`_. On all modern hardware (built within the last 3-4
-years) a virtual appliance is a convenient solution to run NeuroDebian
-simultaneously with the primary operating system -- without noticable
-performance loss.
+For all non-Debian operating systems we recommend to deploy NeuroDebian as a
+`virtual appliance`_ (virtual machine) -- this will only take a few minutes.
+On all modern hardware (built within
+the last 3-4 years) a virtual appliance is a convenient solution to run
+NeuroDebian simultaneously with the primary operating system -- without
+noticeable performance loss. To start using NeuroDebian:
-1. Install NeuroDebian by first downloading this image file:
+1. Download this image file:
.. raw:: html
<a href="http://neuro.debian.net/debian/vm/">NeuroDebian images</a>
</div>
-2. Once downloaded, import this image into your VirtualBox_ installation. If you
- do not have VirtualBox_ installed yet, visit the `VirtualBox download page
- <http://www.virtualbox.org/wiki/Downloads>`_ that provides installers for
- Windows, Linux, Mac and Solaris.
+2. Import this image into VirtualBox_. If you do not have VirtualBox_
+ installed yet, visit the `VirtualBox download page
+ <http://www.virtualbox.org/wiki/Downloads>`_ and get an installer for your
+ system (installers for Windows, Linux, Mac and Solaris are available).
+
+3. Finish the configuration by following :ref:`the instructions on setting up
+ the virtual appliance <chap_vm>`. `[Virtual machine
+ setup video tutorial] <http://www.youtube.com/watch?v=eqfjKV5XaTE>`_
+
-3. Please read :ref:`the detailed instructions on setting up the virtual
- appliance <chap_vm>` to complete the configuration of your NeuroDebian
- environment.
+
+
+You are ready to go -- enjoy NeuroDebian!
.. note::
limit: 10,
rate: 300000});
</script>
+ <div class="nojavascriptinstructions">
+ The news widget requires javascript
+ </div>
.. _identi.ca: http://identi.ca/neurodebian
.. _twitter: http://twitter.com/NeuroDebian
.. start a new list
* **Services**
-* :ref:`Software <pkglists>`
-* :ref:`Data <pkgs-by_purpose-neuroscience_datasets>`
+* :ref:`Software <pkg_tocs>`
+* :ref:`Data <toc_pkgs_for_suite_data>`
* :ref:`Appliance <chap_vm>`
.. start a new list
projects
testimonials
testimonials-topics
+ vm_welcome
+ derivatives
+
+.. are these supposed to be visible?
+.. toctree::
+ :hidden:
+
+ machines
+ todo
+
+.. toctree::
+ :hidden:
+ :glob:
+
+ pkgs/*
+ pkglists/*
.. probably should be purged altogether
.. toctree::
:hidden:
- booth_sfn2010
- datasets
livecd
quotes-nihr01
quotes-nitrc
- sources_lists
- vm_welcome
dump
.. include:: link_names.txt
};
- function createrepourl(rel, mir) {
- if(rel in rel2name && mir in mirrors) {
-
- var retrepo = "wget -O- http://neuro.debian.net/lists/" + rel2name[rel] + "."
- + mir + " | sudo tee /etc/apt/sources.list.d/neurodebian.sources.list\n"
+ function createrepourl(rel, mir, comp) {
+ if(mir in mirrors) {
+ var retrepo = "wget -O- http://neuro.debian.net/lists/" + rel + "."
+ + mir + "." + comp + " | sudo tee /etc/apt/sources.list.d/neurodebian.sources.list\n"
+ "sudo apt-key adv --recv-keys --keyserver pgp.mit.edu 2649A5A9\n";
return retrepo;
}
};
- function updateout(rel, mir) {
+
+ function update_by_form() {
+ var rel = $("#release").val();
+ var mir = $("#mirror").val();
+ var comp = $('input[name="components"]:checked').val();
if (rel != '' && mir != '') {
if (rel in {'win32':'', 'win64':'', 'mac':''}) {
$('#vmimagedownload').html(createvmdownload(rel, mir));
$('#vmsetup').slideDown();
- $('#reposetup').slideUp();
+ $('#repoconfig').slideUp();
} else {
- $('#code').text(createrepourl(rel, mir));
- $('#reposetup').slideDown();
$('#vmsetup').slideUp();
+ $('#repoconfig').slideDown();
+ if (comp == undefined) {
+ $('#reposetup').slideUp();
+ } else {
+ $('#code').text(createrepourl(rel, mir, comp));
+ $('#reposetup').slideDown();
+ }
};
}
else
{
- $('#reposetup').slideUp();
+ $('#repoconfig').slideUp();
$('#vmsetup').slideUp();
};
};
- $('#release').change(function() {
- var singleValues = $("#release").val();
- var mirrorVal = $("#mirror").val();
- updateout(singleValues, mirrorVal);
- });
- $('#mirror').change(function() {
- var singleValues = $("#release").val();
- var mirrorVal = $("#mirror").val();
- updateout(singleValues, mirrorVal);
- });
$(document).ready(function($) {
- updateout($("#release").val(), $("#mirror").val());
+ update_by_form();
+ $('#repoconfig').hide()
+ $('#reposetup').hide();
+ $('#vmsetup').hide()
+ $('#release').change(update_by_form);
+ $('#mirror').change(update_by_form);
+ $('input[name=components]:radio').change(update_by_form);
});
- foldbuttontoggle('morepublications');
-
-
</script>
-
-
projects / neurodebian.git / blobdiff