*/
#include "mothur.h"
+#include "mothurout.h"
class SharedRAbundVector;
class SharedOrderVector;
class SharedUtil {
public:
- SharedUtil() {};
+ SharedUtil() { m = MothurOut::getInstance(); }
~SharedUtil() {};
void getSharedVectors(vector<string>, vector<SharedRAbundVector*>&, SharedOrderVector*);
void getSharedVectorswithReplacement(vector<string>, vector<SharedRAbundVector*>&, SharedOrderVector*);
+ void setGroups(vector<string>&, vector<string>&); //globaldata->Groups, your tree or group map
void setGroups(vector<string>&, vector<string>&, string); //globaldata->Groups, your tree or group map, mode
void setGroups(vector<string>&, vector<string>&, string&, int&, string); //globaldata->Groups, your tree or group map, allgroups, numGroups, mode
void getCombos(vector<string>&, vector<string>, int&); //groupcomb, globaldata->Groups, numcomb
void updateGroupIndex(vector<string>&, map<string, int>&); //globaldata->Groups, groupmap->groupIndex
+ bool isValidGroup(string, vector<string>);
private:
-
- bool isValidGroup(string, vector<string>);
+ MothurOut* m;
+
};
/**************************************************************************************************/
-
-
-#endif
\ No newline at end of file
+#endif