#include "sharedthetayc.h"
/***********************************************************************/
-EstOutput ThetaYC::getValues(SharedRAbundVector* shared1, SharedRAbundVector* shared2) {
+EstOutput ThetaYC::getValues(vector<SharedRAbundVector*> shared) {
try {
data.resize(1,0);
float b = 0;
//get the total values we need to calculate the theta denominator sums
- for (int i = 0; i < shared1->size(); i++) {
+ for (int i = 0; i < shared[0]->size(); i++) {
//store in temps to avoid multiple repetitive function calls
- Atotal += shared1->getAbundance(i);
- Btotal += shared2->getAbundance(i);
+ Atotal += shared[0]->getAbundance(i);
+ Btotal += shared[1]->getAbundance(i);
}
//calculate the theta denominator sums
- for (int j = 0; j < shared1->size(); j++) {
+ for (int j = 0; j < shared[0]->size(); j++) {
//store in temps to avoid multiple repetitive function calls
- relA = shared1->getAbundance(j) / (float)Atotal;
- relB = shared2->getAbundance(j) / (float)Btotal;
+ relA = shared[0]->getAbundance(j) / (float)Atotal;
+ relB = shared[1]->getAbundance(j) / (float)Btotal;
a += relA * relB;
b += pow((relA-relB),2);
return data;
}
catch(exception& e) {
- cout << "Standard Error: " << e.what() << " has occurred in the ThetaYC class Function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+ m->errorOut(e, "ThetaYC", "getValues");
exit(1);
}
- catch(...) {
- cout << "An unknown error has occurred in the ThetaYC class Function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
- exit(1);
- }
}
/***********************************************************************/