//read count file
CountTable countTable;
- countTable.readTable(countfile);
+ countTable.readTable(countfile, true);
//initialize maps
namesOfGroups = countTable.getNamesOfGroups();
if(m->control_pressed) { out.close(); m->mothurRemove(filename); return 1; }
- out << ">" << nameVector[i].name << "/ab=" << nameVector[i].numIdentical << "/" << endl << nameVector[i].seq << endl;
+ out << ">" << nameVector[i].name << "/ab=" << nameVector[i].numIdentical << "/" << endl << nameVector[i].seq << endl; //
}
}else {