#include "mothur.h"
#include "command.hpp"
-#include "globaldata.hpp"
-
-
class SeqSummaryCommand : public Command {
public:
void help();
private:
- GlobalData* globaldata;
- OptionParser* parser;
- map<string, string> parameters;
- map<string, string>::iterator it;
bool abort;
- string fastafile;
+ string fastafile, outputDir;
+ int processors;
+
+ struct linePair {
+ int start;
+ int num;
+ linePair(long int i, long int j) : start(i), num(j) {}
+ };
+ vector<linePair*> lines;
+ vector<int> processIDS;
+
+ int createProcessesCreateSummary(vector<int>&, vector<int>&, vector<int>&, vector<int>&, vector<int>&, string, string);
+ int driverCreateSummary(vector<int>&, vector<int>&, vector<int>&, vector<int>&, vector<int>&, string, string, linePair*);
+ int setLines(string);
+
+ #ifdef USE_MPI
+ int MPICreateSummary(int, int, vector<int>&, vector<int>&, vector<int>&, vector<int>&, vector<int>&, MPI_File&, MPI_File&, vector<long>&);
+ #endif
};