class SeqSummaryCommand : public Command {
public:
SeqSummaryCommand(string);
+ SeqSummaryCommand();
~SeqSummaryCommand();
+ vector<string> getRequiredParameters();
+ vector<string> getValidParameters();
+ vector<string> getRequiredFiles();
+ map<string, vector<string> > getOutputFiles() { return outputTypes; }
int execute();
void help();
bool abort;
string fastafile, outputDir;
int processors;
+ vector<string> outputNames;
+ map<string, vector<string> > outputTypes;
struct linePair {
unsigned long int start;