finished mpi for filter.seqs

[mothur.git] / screenseqscommand.h

diff --git a/screenseqscommand.h b/screenseqscommand.h
index eab66ee23d5c0d07a6498b67ab130fb8a7622f4d..54f4bb153d66b89728a1d10fd073cb14f3957779 100644 (file)
--- a/screenseqscommand.h
+++ b/screenseqscommand.h
@@ -21,12 +21,14 @@ public:
        void help();
        
 private:
-       void screenNameGroupFile(set<string>);
-       void screenGroupFile(set<string>);
-
+       int screenNameGroupFile(set<string>);
+       int screenGroupFile(set<string>);
+       int screenAlignReport(set<string>);
+       
        bool abort;
-       string fastafile, namefile, groupfile;
+       string fastafile, namefile, groupfile, alignreport, outputDir;
        int startPos, endPos, maxAmbig, maxHomoP, minLength, maxLength;
+       vector<string> outputNames;
 };
 
 #endif