-.TH samtools 1 "2 December 2010" "samtools-0.1.12" "Bioinformatics tools"
+.TH samtools 1 "1 March 2011" "samtools-0.1.13" "Bioinformatics tools"
.SH NAME
.PP
samtools - Utilities for the Sequence Alignment/Map (SAM) format
.TP
.B phase
-samtools phase [-F] [-k len] [-b prefix] [-q minLOD] [-Q minBaseQ] <in.bam>
+samtools phase [-AF] [-k len] [-b prefix] [-q minLOD] [-Q minBaseQ] <in.bam>
Call and phase heterozygous SNPs.
.B OPTIONS:
.RS
.TP 8
+.B -A
+Drop reads with ambiguous phase.
+.TP 8
.BI -b \ STR
Prefix of BAM output. When this option is in use, phase-0 reads will be saved in file
.BR STR .0.bam