Added a note to the manual. Currently SAMtools used unaligned words in

[samtools.git] / samtools.1

diff --git a/samtools.1 b/samtools.1
index acd27bce753f5e801baa6e5b355c8b9ca94a43a0..802e7a54185180f4c3c6bfc82329b3a88f7c71b1 100644 (file)
--- a/samtools.1
+++ b/samtools.1
@@ -319,7 +319,7 @@ _
 .SH LIMITATIONS
 .PP
 .IP o 2
-Reference sequence names and lengths are not acquired from the BAM/SAM header.
+Unaligned words used in bam_import.c, bam_endian.h, bam.c and bam_aux.c.
 .IP o 2
 CIGAR operation P is not properly handled at the moment.
 .IP o 2