rename iterf as iter

[samtools.git] / samtools.1

diff --git a/samtools.1 b/samtools.1
index 77ac869b77e67c793d6d075cd33dba1f3c49680e..366a5630ececd0956b6225ad44bbc5d5fb7f087c 100644 (file)
--- a/samtools.1
+++ b/samtools.1
@@ -1,4 +1,4 @@
-.TH samtools 1 "2 September 2009" "samtools-0.1.6" "Bioinformatics tools"
+.TH samtools 1 "10 November 2009" "samtools-0.1.7" "Bioinformatics tools"
 .SH NAME
 .PP
 samtools - Utilities for the Sequence Alignment/Map (SAM) format
@@ -18,6 +18,8 @@ samtools faidx ref.fasta
 .PP
 samtools pileup -f ref.fasta aln.sorted.bam
 .PP
+samtools mpileup -f ref.fasta -r chr3:1,000-2,000 in1.bam in2.bam
+.PP
 samtools tview aln.sorted.bam ref.fasta
 
 .SH DESCRIPTION
@@ -232,6 +234,8 @@ covering reads, the first alllele, the second allele, # reads supporting
 the first allele, # reads supporting the second allele and # reads
 containing indels different from the top two alleles.
 
+The position of indels is offset by -1.
+
 .B OPTIONS:
 .RS