fprintf(stderr, " -S input is SAM\n");
fprintf(stderr, " -u uncompressed BAM output (force -b)\n");
fprintf(stderr, " -x output FLAG in HEX (samtools-C specific)\n");
- fprintf(stderr, " -X output FLAG in stirng (samtools-C specific)\n");
+ fprintf(stderr, " -X output FLAG in string (samtools-C specific)\n");
fprintf(stderr, " -t FILE list of reference names and lengths (force -S) [null]\n");
fprintf(stderr, " -T FILE reference sequence file (force -S) [null]\n");
fprintf(stderr, " -o FILE output file name [stdout]\n");