#ifndef __SAM_HEADER_H__
#define __SAM_HEADER_H__
-#include "khash.h"
-KHASH_MAP_INIT_STR(str,const char *)
-
-// HeaderDict is a list_t of header lines. Each HeaderLine holds a list of tags.
-struct _list_t
-{
- struct _list_t *next;
- void *data;
-};
-typedef struct _list_t list_t;
-typedef list_t HeaderDict;
-
-typedef struct
-{
- char key[2];
- char *value;
-}
-HeaderTag;
-
-typedef struct
-{
- char type[2];
- list_t *tags;
-}
-HeaderLine;
-
-
-void debug(const char *format, ...);
-void error(const char *format, ...);
+#ifdef __cplusplus
+extern "C" {
+#endif
-HeaderDict *sam_header_parse(const char *headerText);
-HeaderDict *sam_header_merge(int n, const HeaderDict **dicts);
-void sam_header_free(HeaderDict *header);
-char *sam_header_write(const HeaderDict *headerDict); // returns a newly allocated string
+ void *sam_header_parse2(const char *headerText);
+ void *sam_header_merge(int n, const void **dicts);
+ void sam_header_free(void *header);
+ char *sam_header_write(const void *headerDict); // returns a newly allocated string
-khash_t(str) *sam_header_lookup_table(const HeaderDict *dict, char type[2], char key_tag[2], char value_tag[2]);
+ char **sam_header2list(const void *_dict, char type[2], char key_tag[2], int *_n);
-list_t *list_append(list_t *root, void *data);
-void list_free(list_t *root);
+ void *sam_header2tbl(const void *dict, char type[2], char key_tag[2], char value_tag[2]);
+ const char *sam_tbl_get(void *h, const char *key);
+ int sam_tbl_size(void *h);
+ void sam_tbl_destroy(void *h);
-//char *sam_header_get(const HeaderDict *d, char type[2], int i, char tag[2]);
-//int sam_header_ins(HeaderDict *d, char tp[2], int i, char tg[2], const char *s);
-//int sam_header_del(HeaderDict *d, char type[2], int i, char tag[2]);
+#ifdef __cplusplus
+}
+#endif
#endif