@param aux auxiliary data; if mode[0]=='w', aux points to
bam_header_t; if strcmp(mode, "rb")!=0 and @SQ header lines in SAM
are absent, aux points the file name of the list of the reference;
- aux is not used otherwise.
+ aux is not used otherwise. If @SQ header lines are present in SAM,
+ aux is not used, either.
@return SAM/BAM file handler
*/
*/
int sampileup(samfile_t *fp, int mask, bam_pileup_f func, void *data);
+ char *samfaipath(const char *fn_ref);
+
#ifdef __cplusplus
}
#endif