*
*/
-#include "mothur.h"
#include "command.hpp"
-#include "globaldata.hpp"
class ReverseSeqsCommand : public Command {
public:
ReverseSeqsCommand(string);
- ~ReverseSeqsCommand();
- int execute();
- void help();
+ ReverseSeqsCommand();
+ ~ReverseSeqsCommand() {}
+
+ vector<string> setParameters();
+ string getCommandName() { return "reverse.seqs"; }
+ string getCommandCategory() { return "Sequence Processing"; }
+ string getHelpString();
+ string getCitation() { return "http://www.mothur.org/wiki/Reverse.seqs"; }
+
+ int execute();
+ void help() { m->mothurOut(getHelpString()); }
private:
- GlobalData* globaldata;
- OptionParser* parser;
- map<string, string> parameters;
- map<string, string>::iterator it;
- bool abort;
- string fasta;
+ bool abort;
+ string fastaFileName, qualFileName, outputDir;
+ vector<string> outputNames;
};