private:
set<string> names;
- string accnosfile, fastafile, namefile, groupfile, alignfile, listfile, outputDir;
+ string accnosfile, fastafile, namefile, groupfile, alignfile, listfile, taxfile, outputDir;
bool abort, dups;
vector<string> outputNames;
int readAlign();
void readAccnos();
int readList();
+ int readTax();
};