vector<string> setParameters();
string getCommandName() { return "remove.otus"; }
string getCommandCategory() { return "OTU-Based Approaches"; }
+ string getOutputFileNameTag(string, string);
string getHelpString();
string getCitation() { return "http://www.mothur.org/wiki/Remove.otus"; }
-
+ string getDescription() { return "outputs a new list file containing the otus NOT containing sequences from the groups specified"; }
+
int execute();
void help() { m->mothurOut(getHelpString()); }
vector<string> outputNames, Groups;
GroupMap* groupMap;
- void readAccnos();
int readListGroup();
int processList(ListVector*&, GroupMap*&, ofstream&, ofstream&, bool&);