class ReadTreeCommand : public Command {
public:
ReadTreeCommand(string);
+ ReadTreeCommand() {}
~ReadTreeCommand();
+ vector<string> getRequiredParameters();
+ vector<string> getValidParameters();
+ vector<string> getRequiredFiles();
+ map<string, vector<string> > getOutputFiles() { return outputTypes; }
int execute();
void help();
GlobalData* globaldata;
ReadTree* read;
TreeMap* treeMap;
- string filename, treefile, groupfile;
- OptionParser* parser;
- map<string, string> parameters;
- map<string, string>::iterator it;
+ string filename, treefile, groupfile, namefile;
bool abort;
+ map<string, string> nameMap;
+ vector<string> outputNames;
+ map<string, vector<string> > outputTypes;
+
+ int readNamesFile();
+ int numUniquesInName;
};