class ReadCluster {
public:
- ReadCluster(string, float);
+ ReadCluster(string, float, string, bool);
~ReadCluster();
- void read(NameAssignment*);
+ int read(NameAssignment*);
string getOutputFile() { return OutPutFile; }
void setFormat(string f) { format = f; }
ListVector* getListVector() { return list; }
private:
GlobalData* globaldata;
- string distFile;
+ string distFile, outputDir;
string OutPutFile, format;
ListVector* list;
float cutoff;
+ MothurOut* m;
+ bool sortWanted;
- void convertPhylip2Column(NameAssignment*);
+ int convertPhylip2Column(NameAssignment*);
};
/******************************************************/