ReadBlast(string, float, float, int, bool, bool); //blastfile, cutoff, penalty, length of overlap, min or max bsr, hclusterWanted
~ReadBlast() {}
- void read(NameAssignment*);
+ int read(NameAssignment*);
SparseMatrix* getDistMatrix() { return matrix; }
vector<seqDist> getOverlapMatrix() { return overlap; }
string getOverlapFile() { return overlapFile; }
SparseMatrix* matrix;
vector<seqDist> overlap;
+ MothurOut* m;
- void readNames(NameAssignment*);
+ int readNames(NameAssignment*);
};
/*******************************************************************************************/